Package: hilldiv3
Title: Integral Analysis of Diversity Based on Hill Numbers
Version: 3.1.1
Authors@R: 
    person("Antton", "Alberdi", , "antton.alberdi@sund.ku.dk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-2875-6446"))
Description: Measures and compares the diversity of biological communities
    (e.g. tables of operational taxonomic units (OTUs), amplicon sequence
    variants (ASVs) or metagenome-assembled genomes (MAGs)) based on Hill
    numbers, in a unified framework for neutral, phylogenetic and functional
    diversity measurement, diversity partitioning, (dis)similarity
    measurement, diversity profiles, evenness, redundancy and attribution of
    Hill power-sum weight to taxa and sets. The
    statistical framework encompasses richness, Shannon and Simpson
    diversity, Faith's phylogenetic diversity (PD), Rao's quadratic entropy
    and Sorensen- and UniFrac-type dissimilarities, all grounded in a single
    Hill-number framework. Methods are described in Jost (2007)
    <doi:10.1890/06-1736.1>, Chao et al. (2010)
    <doi:10.1098/rstb.2010.0272>, Chiu et al. (2014) <doi:10.1890/12-0960.1>
    and reviewed in Alberdi & Gilbert (2019) <doi:10.1111/1755-0998.13014>.
    Optional import adapters interoperate with the Bioconductor packages
    'phyloseq', 'SummarizedExperiment' and 'TreeSummarizedExperiment',
    which are available from <https://bioconductor.org>.
License: GPL-3
Language: en-GB
URL: https://github.com/alberdilab/hilldiv3,
        https://alberdilab.github.io/hilldiv3/
BugReports: https://github.com/alberdilab/hilldiv3/issues
Depends: R (>= 4.1.0)
Imports: ape, cli, grDevices, graphics, methods, rlang, stats, utils
Suggests: cluster, furrr, future, ggplot2, knitr, patchwork, phyloseq,
        progressr, rmarkdown, SummarizedExperiment, testthat (>=
        3.0.0), tibble, TreeSummarizedExperiment, vegan
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-10-16 09:18:08 UTC; anttonalberdi
Author: Antton Alberdi [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2875-6446>)
Maintainer: Antton Alberdi <antton.alberdi@sund.ku.dk>
Repository: CRAN
Date/Publication: 2026-10-16 14:00:02 UTC
Built: R 4.6.1; ; 2026-10-16 14:24:27 UTC; unix
