Package: RHybridFinder
Type: Package
Title: Identification of Hybrid Peptides in Immunopeptidomic Analyses
Version: 0.2.0
Authors@R: c(person("Frederic", "Saab", role = c("aut", "cre"),
                      email = "frederic.saab@umontreal.ca"),
               person("Peter", "Kubiniok", role = "aut") )
Maintainer: Frederic Saab <frederic.saab@umontreal.ca>
Description: Tool for the analysis Mass Spectrometry (MS) data in the context of 
             immunopeptidomic analysis for the identification of hybrid 
             peptides and the predictions of binding affinity of all peptides 
             using 'netMHCpan' <doi:10.1093/nar/gkaa379> while providing a summary 
             of the netMHCpan output. 'RHybridFinder' (RHF) is destined for 
             researchers who are looking to analyze their MS data for the purpose 
             of identification of potential spliced peptides. This package, 
             developed mainly in base R, is based on the workflow published by 
             Faridi et al. in 2018 <doi:10.1126/sciimmunol.aar3947>.
Imports: doParallel, foreach, seqinr
Depends: R (>= 3.5.0)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
NeedsCompilation: no
LazyData: True
LazyDataCompression: bzip2
Packaged: 2021-08-17 01:48:50 UTC; caron-fs
Author: Frederic Saab [aut, cre],
  Peter Kubiniok [aut]
Repository: CRAN
Date/Publication: 2021-08-17 16:30:24 UTC
Built: R 4.4.3; ; 2026-02-02 03:23:34 UTC; windows
