HarmonyMatrix           A proxy call to 'RunHarmony()'. Deprecated.
RunHarmony              Generic function that runs the harmony
                        algorithm on single-cell genomics cell
                        embeddings.
RunHarmony.Seurat       Applies harmony on a Seurat object cell
                        embedding.
RunHarmony.SingleCellExperiment
                        Applies harmony on PCA cell embeddings of a
                        SingleCellExperiment.
RunHarmony.default      This is the primary harmony interface.
cell_lines              List of metadata table and scaled PCs matrix
cell_lines_small        Same as cell_lines but smaller (300 cells).
harmony                 Harmony: fast, accurate, and robust single cell
                        integration.
harmony_options         Set advanced parameters for RunHarmony
moe_ridge_get_betas     Get beta Utility
pbmc.ctrl               Gene expression data of control PBMC from Kang
                        et al. 2017. This contains a sample of 1000
                        cells from that condition and is used for the
                        Seurat Vignette.
pbmc.stim               Gene expression data of stimulated PBMC from
                        Kang et al. 2017. This contains a sample of
                        1000 cells from that condition and is used for
                        the Seurat Vignette.
