# Efficient Monitoring of Global Biodiversity Portfolios

## Documentation for package ‘mapme.biodiversity’ version 0.9.5

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

A B C D E F G H I K L M N P R S T U W

## -- A --

accessibility_2000 | Accessibility to Cities in 2000
acled | Armed Conflict Location & Event Data (ACLED)
available_indicators | Register or list indicators in mapme.biodiversity
available_resources | Register or list resources in mapme.biodiversity

## -- B --

biodiversity_intactness_index_indicator | Calculate Biodiversity Intactness Index
biodiversity_intactness_index_resource | Biodiversity Intactness Index
biome | Calculate biomes statistics (TEOW) based on WWF
burned_area | Calculate Monthly Burned Area based on MODIS (MCD64A1)

## -- C --

calc_biodiversity_intactness_index | Calculate Biodiversity Intactness Index
calc_biome | Calculate biomes statistics (TEOW) based on WWF
calc_burned_area | Calculate Monthly Burned Area based on MODIS (MCD64A1)
calc_deforestation_drivers | Calculate deforestation drivers
calc_drought_indicator | Calculate drought indicator statistics
calc_ecoregion | Calculate terrestrial ecoregions statistics (TEOW) based on WWF
calc_elevation | Calculate elevation statistics
calc_exposed_population_acled | Calculate population exposed to violent conflict from ACLED
calc_exposed_population_ucdp | Calculate population exposed to violent conflict from UCDP GED
calc_fatalities_acled | Calculate number of fatalities of conflict events from ACLED
calc_fatalities_ucdp | Calculate number of fatalities of violent conflict from UCDP GED
calc_gsw_change | Calculate Global Surface Water (GSW) Change
calc_gsw_occurrence | Calculate Global Surface Water (GSW) Occurrence
calc_gsw_recurrence | Calculate Global Surface Water (GSW) Recurrence
calc_gsw_seasonality | Calculate Global Surface Water (GSW) Seasonality
calc_gsw_time_series | Calculate Global Surface Water Time Series
calc_gsw_transitions | Calculate Global Surface Water (GSW) Transitions
calc_humanfootprint | Calculate human footprint statistics
calc_indicators | Portfolio methods for mapme.biodiversity
calc_ipbes_biomes | Calculate areal statistics for IBPES Biomes
calc_irr_carbon | Calculate carbon statistics
calc_key_biodiversity_area | Calculate Key Biodiversity Areas
calc_landcover | Calculate area of different landcover classes
calc_mangroves_area | Calculate mangrove extent based on Global Mangrove Watch (GMW)
calc_man_carbon | Calculate carbon statistics
calc_population_count | Calculate population count statistics
calc_precipitation_chelsa | Calculate precipitation average based on CHELSA
calc_precipitation_chirps | Calculate precipitation sums based on CHIRPS
calc_precipitation_wc | Calculate precipitation statistics
calc_slope | Calculate slope statistics
calc_soilproperties | Calculate Zonal Soil Properties
calc_species_richness | Species richness based on IUCN raster data
calc_temperature_max_wc | Calculate maximum temperature statistics
calc_temperature_min_wc | Calculate minimum temperature statistics based on WorldClim
calc_traveltime | Calculate accessibility statistics
calc_traveltime_2000 | Calculate accessibility statistics for the year 2000
calc_treecoverloss_emissions | Calculate emission statistics
calc_treecover_area | Calculate treecover statistics
calc_treecover_area_and_emissions | Calculate treeloss statistics
calc_tri | Calculate Terrain Ruggedness Index (TRI) statistics
calc_vul_carbon | Calculate carbon statistics
carbon_indicators | Calculate carbon statistics
carbon_resources | Carbon Layers
check_available_years | Helper to check yearly availability
check_engine | Function to select processing engines
check_namespace | Checks if namespace is available
check_stats | Function to select processing engines
chelsa | Climatologies at High resolution for the Earth Land Surface Areas (CHELSA)
chirps | Climate Hazards Group InfraRed Precipitation with Station data (CHIRPS)

## -- D --

deforestation_drivers | Calculate deforestation drivers
drought_indicator | Calculate drought indicator statistics

## -- E --

ecoregion | Calculate terrestrial ecoregions statistics (TEOW) based on WWF
elevation | Calculate elevation statistics
engine | Function to select processing engines
esalandcover | ESA Copernicus Global Land Cover layer
exposed_population_ucdp | Calculate population exposed to violent conflict from UCDP GED

## -- F --

fatalities_acled | Calculate number of fatalities of conflict events from ACLED
fatalities_ucpd | Calculate number of fatalities of violent conflict from UCDP GED
fritz_et_al | Drivers of deforestation for tropical forests

## -- G --

get_accessibility_2000 | Accessibility to Cities in 2000
get_acled | Armed Conflict Location & Event Data (ACLED)
get_biodiversity_intactness_index | Biodiversity Intactness Index
get_chelsa | Climatologies at High resolution for the Earth Land Surface Areas (CHELSA)
get_chirps | Climate Hazards Group InfraRed Precipitation with Station data (CHIRPS)
get_esalandcover | ESA Copernicus Global Land Cover layer
get_fritz_et_al | Drivers of deforestation for tropical forests
get_gfw_emissions | Forest greenhouse gas emissions
get_gfw_lossyear | Year of forest loss occurrence
get_gfw_treecover | Treecover for the year 2000
get_global_surface_water_change | Global Surface Water Change
get_global_surface_water_occurrence | Global Surface Water Occurrence
get_global_surface_water_recurrence | Global Surface Water Recurrence
get_global_surface_water_seasonality | Global Surface Water Seasonality
get_global_surface_water_transitions | Global Surface Water Transitions
get_gmw | Global Mangrove Extent Polygon
get_gsw_time_series | Helper function to download Global Surface Water (GSW) yearly time series data
get_humanfootprint | Terrestrial Human Foootprint
get_ipbes_biomes | Terrestrial and Aquatic Biomes
get_irr_carbon | Carbon Layers
get_iucn | IUCN Red List of Threatened Species
get_key_biodiversity_areas | Key Biodiversity Areas
get_man_carbon | Carbon Layers
get_mcd64a1 | MODIS Burned Area Monthly (MCD64A1)
get_nasa_grace | NASA GRACE-based Drought Indicator layer
get_nasa_srtm | NASADEM HGT v001
get_nelson_et_al | Accessibility to Cities layer
get_resources | Portfolio methods for mapme.biodiversity
get_soilgrids | SoilGrids data layers
get_teow | Terrestrial Ecoregions of the World (TEOW) Polygon
get_ucdp_ged | UCDP Georeferenced Event Dataset (UCDP GED)
get_vul_carbon | Carbon Layers
get_worldclim_max_temperature | Downloads WorldClim Maximum Temperature layer
get_worldclim_min_temperature | Downloads WorldClim Minimum Temperature layer
get_worldclim_precipitation | Downloads WorldClim Mean Precipitation layer
get_worldpop | Population Count layer for year 2000-2020
gfw_emissions | Forest greenhouse gas emissions
gfw_lossyear | Year of forest loss occurrence
gfw_treecover | Treecover for the year 2000
global_surface_water_change | Global Surface Water Change
global_surface_water_occurrence | Global Surface Water Occurrence
global_surface_water_recurrence | Global Surface Water Recurrence
global_surface_water_seasonality | Global Surface Water Seasonality
global_surface_water_transitions | Global Surface Water Transitions
gmw | Global Mangrove Extent Polygon
gsw_change | Calculate Global Surface Water (GSW) Change
gsw_occurrence | Calculate Global Surface Water (GSW) Occurrence
gsw_recurrence | Calculate Global Surface Water (GSW) Recurrence
gsw_seasonality | Calculate Global Surface Water (GSW) Seasonality
gsw_time_series_indicator | Calculate Global Surface Water Time Series
gsw_time_series_resource | Helper function to download Global Surface Water (GSW) yearly time series data
gsw_transitions | Calculate Global Surface Water (GSW) Transitions

## -- H --

humanfootprint_indicator | Calculate human footprint statistics
humanfootprint_resource | Terrestrial Human Foootprint

## -- I --

indicators | Register or list indicators in mapme.biodiversity
ipbes_biomes | Terrestrial and Aquatic Biomes
ipbes_biome_stats | Calculate areal statistics for IBPES Biomes
iucn | IUCN Red List of Threatened Species

## -- K --

key_biodiversity_areas_indicator | Calculate Key Biodiversity Areas
key_biodiversity_areas_resource | Key Biodiversity Areas

## -- L --

landcover | Calculate area of different landcover classes

## -- M --

make_footprints | Create footprints for vector or raster data sets
make_global_grid | Helper to create a grid of regular resolution and CRS
mangroves_area | Calculate mangrove extent based on Global Mangrove Watch (GMW)
mapme | Portfolio methods for mapme.biodiversity
mapme_options | Portfolio methods for mapme.biodiversity
mcd64a1 | MODIS Burned Area Monthly (MCD64A1)

## -- N --

nasa_grace | NASA GRACE-based Drought Indicator layer
nasa_srtm | NASADEM HGT v001
nelson_et_al | Accessibility to Cities layer

## -- P --

population_count | Calculate population count statistics
portfolio | Portfolio methods
portfolio_long | Portfolio methods
portfolio_wide | Portfolio methods
precipitation_chelsa | Calculate precipitation average based on CHELSA
precipitation_chirps | Calculate precipitation sums based on CHIRPS
precipitation_wc | Calculate precipitation statistics
prep_resources | Portfolio methods for mapme.biodiversity

## -- R --

read_portfolio | Portfolio methods
register_indicator | Register or list indicators in mapme.biodiversity
register_resource | Register or list resources in mapme.biodiversity
resources | Register or list resources in mapme.biodiversity

## -- S --

select_engine | Function to select processing engines
slope | Calculate slope statistics
soilgrids | SoilGrids data layers
soilproperties | Calculate Zonal Soil Properties
spds_exists | Check if a spatial data sets exists
species_richness | Species richness based on IUCN raster data

## -- T --

temperature_max_wc | Calculate maximum temperature statistics
temperature_min_wc | Calculate minimum temperature statistics based on WorldClim
teow | Terrestrial Ecoregions of the World (TEOW) Polygon
traveltime | Calculate accessibility statistics
traveltime_2000 | Calculate accessibility statistics for the year 2000
treecoverloss_emissions | Calculate emission statistics
treecover_area | Calculate treecover statistics
treecover_area_and_emissions | Calculate treeloss statistics
tri | Calculate Terrain Ruggedness Index (TRI) statistics

## -- U --

ucdp_ged | UCDP Georeferenced Event Dataset (UCDP GED)

## -- W --

worldclim_max_temperature | Downloads WorldClim Maximum Temperature layer
worldclim_min_temperature | Downloads WorldClim Minimum Temperature layer
worldclim_precipitation | Downloads WorldClim Mean Precipitation layer
worldpop | Population Count layer for year 2000-2020
write_portfolio | Portfolio methods