Last updated on 2026-02-03 19:51:18 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.3 | 9.36 | 370.32 | 379.68 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.3 | 6.39 | 251.07 | 257.46 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.4.0 | 16.00 | 586.05 | 602.05 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 16.00 | 356.18 | 372.18 | ERROR | |
| r-devel-windows-x86_64 | 1.3.3 | 14.00 | 237.00 | 251.00 | OK | |
| r-patched-linux-x86_64 | 1.3.3 | 6.93 | 358.24 | 365.17 | OK | |
| r-release-linux-x86_64 | 1.3.3 | 7.85 | 357.61 | 365.46 | OK | |
| r-release-macos-arm64 | 1.4.0 | 4.00 | 67.00 | 71.00 | OK | |
| r-release-macos-x86_64 | 1.4.0 | 10.00 | 422.00 | 432.00 | OK | |
| r-release-windows-x86_64 | 1.3.3 | 16.00 | 233.00 | 249.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.0 | 4.00 | 69.00 | 73.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.4.0 | 10.00 | 384.00 | 394.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.3.3 | 19.00 | 320.00 | 339.00 | NOTE |
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘biometryassist-Ex.R’ failed
The error most likely occurred in:
> ### Name: autoplot
> ### Title: Generate automatic plots for objects generated in biometryassist
> ### Aliases: autoplot autoplot.mct autoplot.design
>
> ### ** Examples
>
> dat.aov <- aov(Petal.Width ~ Species, data = iris)
Error: object 'iris' not found
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [174s/92s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biometryassist)
>
> test_check("biometryassist")
Starting 2 test processes.
Saving _problems/test-logltest-21.R
Saving _problems/test-mct-1.R
Saving _problems/test-resplot-2.R
> test-satab.R: Source of Variation df
> test-satab.R: =============================================
> test-satab.R: trt 3
> test-satab.R: Residual 16
> test-satab.R: =============================================
> test-satab.R: Total 19
Saving _problems/test-summary_graph-2.R
Saving _problems/test-summary_graph-9.R
Saving _problems/test-summary_graph-15.R
Saving _problems/test-summary_graph-21.R
Saving _problems/test-summary_graph-28.R
> test-utility_functions.R: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> test-utility_functions.R: | biometryassist version 1.4.0 |
> test-utility_functions.R: | Authors: Sharon Nielsen, Sam Rogers, Annie Conway |
> test-utility_functions.R: | Developed at the University of Adelaide with funding provided |
> test-utility_functions.R: | by the Australian Grains Research and Development Corporation. |
> test-utility_functions.R: | Package website: https://biometryhub.github.io/biometryassist |
> test-utility_functions.R: | |
> test-utility_functions.R: | If you have used this package in your work, please cite it. |
> test-utility_functions.R: | Type 'citation('biometryassist')' for the citation details. |
> test-utility_functions.R: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> test-utility_functions.R:
> test-utility_functions.R: NULL
Saving _problems/test-variogram-91.R
[ FAIL 9 | WARN 1 | SKIP 139 | PASS 1215 ]
══ Skipped tests (139) ═════════════════════════════════════════════════════════
• On CRAN (131): 'test-all-w2.r:5:5', 'test-all-w2.r:19:5',
'test-all-w2.r:32:5', 'test-all-w2.r:45:5', 'test-all-w2.r:58:5',
'test-all-w2.r:72:5', 'test-all-w2.r:87:5', 'test-all-w2.r:132:5',
'test-all-w2.r:157:5', 'test-all-w2.r:186:5', 'test-all-w2.r:202:5',
'test-all-w2.r:216:5', 'test-all-w2.r:230:5', 'test-all-w2.r:240:5',
'test-all-w2.r:253:5', 'test-all-w2.r:266:5', 'test-all-w2.r:280:5',
'test-all-w2.r:291:5', 'test-all-w2.r:305:5', 'test-all-w2.r:319:5',
'test-all-w2.r:337:5', 'test-all-w2.r:352:5', 'test-all-w2.r:378:5',
'test-all-w2.r:408:5', 'test-heatmap.R:25:1', 'test-heatmap.R:37:1',
'test-heatmap.R:42:1', 'test-heatmap.R:47:1', 'test-heatmap.R:54:1',
'test-heatmap.R:61:1', 'test-use_template.R:9:3', 'test-use_template.R:18:3',
'test-use_template.R:27:3', 'test-use_template.R:38:3',
'test-use_template.R:49:3', 'test-use_template.R:59:3',
'test-use_template.R:75:3', 'test-use_template.R:97:3',
'test-use_template.R:116:3', 'test-utility_functions.R:6:1',
'test-variogram.r:74:5', 'test-variogram.r:139:5', 'test-variogram.r:190:5',
'test-zzz_install_asreml.R:277:5', 'test-zzz_install_asreml.R:303:5',
'test-zzz_install_asreml.R:320:5', 'test-zzz_install_asreml.R:439:5',
'test-zzz_install_asreml.R:454:5', 'test-zzz_install_asreml.R:609:5',
'test-zzz_install_asreml.R:618:5', 'test-zzz_install_asreml.R:630:5',
'test-zzz_install_asreml.R:642:5', 'test-zzz_install_asreml.R:670:5',
'test-zzz_install_asreml.R:684:5', 'test-zzz_install_asreml.R:694:5',
'test-zzz_install_asreml.R:723:5', 'test-zzz_install_asreml.R:737:5',
'test-zzz_install_asreml.R:751:5', 'test-zzz_install_asreml.R:762:5',
'test-zzz_install_asreml.R:780:5', 'test-zzz_install_asreml.R:804:5',
'test-zzz_install_asreml.R:825:5', 'test-zzz_install_asreml.R:846:5',
'test-zzz_install_asreml.R:861:5', 'test-zzz_install_asreml.R:876:5',
'test-zzz_install_asreml.R:886:5', 'test-zzz_install_asreml.R:896:5',
'test-zzz_install_asreml.R:905:5', 'test-zzz_install_asreml.R:918:5',
'test-zzz_install_asreml.R:927:5', 'test-zzz_install_asreml.R:943:5',
'test-zzz_install_asreml.R:959:5', 'test-zzz_install_asreml.R:980:5',
'test-zzz_install_asreml.R:999:5', 'test-zzz_install_asreml.R:1027:5',
'test-zzz_install_asreml.R:1058:5', 'test-zzz_install_asreml.R:1126:5',
'test-zzz_install_asreml.R:1149:5', 'test-zzz_install_asreml.R:1175:5',
'test-zzz_install_asreml.R:1197:5', 'test-zzz_install_asreml.R:1222:5',
'test-zzz_install_asreml.R:1248:5', 'test-zzz_install_asreml.R:1272:5',
'test-zzz_install_asreml.R:1305:5', 'test-zzz_install_asreml.R:1338:5',
'test-zzz_install_asreml.R:1371:5', 'test-zzz_install_asreml.R:1393:5',
'test-zzz_install_asreml.R:1417:5', 'test-zzz_install_asreml.R:1434:5',
'test-zzz_install_asreml.R:1453:5', 'test-design.R:1:1',
'test-design.R:16:1', 'test-design.R:32:1', 'test-design.R:47:1',
'test-design.R:59:1', 'test-design.R:74:1', 'test-design.R:119:1',
'test-design.R:137:1', 'test-design.R:151:1', 'test-design.R:165:1',
'test-design.R:179:1', 'test-design.R:212:1', 'test-design.R:227:1',
'test-design.R:241:1', 'test-design.R:254:1', 'test-design.R:265:1',
'test-design.R:280:1', 'test-design.R:295:1', 'test-design.R:310:1',
'test-design.R:324:1', 'test-design.R:352:1', 'test-design.R:470:1',
'test-design.R:619:1', 'test-design.R:652:1', 'test-design.R:662:1',
'test-design.R:669:1', 'test-design.R:676:1', 'test-design.R:683:1',
'test-design.R:690:1', 'test-design.R:709:1', 'test-design.R:726:1',
'test-design.R:743:1', 'test-design.R:760:1', 'test-design.R:777:1',
'test-design.R:794:1', 'test-design.R:833:1', 'test-design.R:858:1',
'test-design.R:892:1', 'test-design.R:925:1', 'test-design.R:972:1',
'test-design.R:986:1'
• rlang::is_installed("asreml") is not TRUE (8): 'test-logltest.R:4:5',
'test-logltest.R:26:5', 'test-logltest.R:34:5', 'test-logltest.R:47:5',
'test-logltest.R:59:5', 'test-logltest.R:75:5', 'test-logltest.R:92:5',
'test-logltest.R:98:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-logltest.R:21:5'): logltest gives an error on different model type ──
Error in `eval(code, test_env)`: object 'iris' not found
Backtrace:
▆
1. └─stats::aov(Petal.Length ~ Petal.Width, data = iris) at test-logltest.R:21:5
2. ├─stats::terms(formula, "Error", data = data)
3. └─stats::terms.formula(formula, "Error", data = data)
── Error ('test-mct.R:1:1'): (code run outside of `test_that()`) ───────────────
Error in `eval(code, test_env)`: object 'iris' not found
Backtrace:
▆
1. └─stats::aov(Petal.Width ~ Species, data = iris) at test-mct.R:1:1
2. ├─stats::terms(formula, "Error", data = data)
3. └─stats::terms.formula(formula, "Error", data = data)
── Error ('test-resplot.R:2:1'): (code run outside of `test_that()`) ───────────
Error in `eval(code, test_env)`: object 'iris' not found
Backtrace:
▆
1. └─stats::aov(Petal.Length ~ Petal.Width, data = iris) at test-resplot.R:2:1
2. ├─stats::terms(formula, "Error", data = data)
3. └─stats::terms.formula(formula, "Error", data = data)
── Error ('test-summary_graph.R:2:5'): Objects produced by summary_graph are ggplot objects ──
Error in `eval(code, test_env)`: object 'iris' not found
Backtrace:
▆
1. └─biometryassist::summary_graph(...) at test-summary_graph.R:2:5
2. └─base::is.data.frame(data)
── Error ('test-summary_graph.R:8:5'): Summary graph works for one explanatory variable ──
Error in `eval(code, test_env)`: object 'iris' not found
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-summary_graph.R:8:5
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─biometryassist::summary_graph(...)
5. └─base::is.data.frame(data)
── Error ('test-summary_graph.R:14:5'): Summary graph works for two explanatory variables ──
Error in `eval(code, test_env)`: object 'npk' not found
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-summary_graph.R:14:5
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─biometryassist::summary_graph(npk, "yield", c("N", "P"), "lb/plot")
5. └─base::is.data.frame(data)
── Error ('test-summary_graph.R:20:5'): Summary graph works for three explanatory variables ──
Error in `eval(code, test_env)`: object 'npk' not found
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-summary_graph.R:20:5
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─biometryassist::summary_graph(...)
5. └─base::is.data.frame(data)
── Error ('test-summary_graph.R:28:5'): Errors are produced for invalid input ──
Error in `eval(code, test_env)`: object 'iris' not found
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-summary_graph.R:28:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─biometryassist::summary_graph(iris, "def", "ghi", "jkl")
8. └─base::is.data.frame(data)
── Error ('test-variogram.r:91:5'): vario produces an error for other models and data types ──
Error in `eval(mf, parent.frame())`: object 'iris' not found
Backtrace:
▆
1. ├─stats::model.frame(...)
2. └─stats::model.frame.default(...)
3. └─base::is.data.frame(data)
[ FAIL 9 | WARN 1 | SKIP 139 | PASS 1215 ]
Deleting unused snapshots: 'all-w2/example1autoplot.svg',
'all-w2/example2autoplot.svg', 'all-w2/example3autoplot.svg',
'all-w2/example3lmmautoplot.svg', 'all-w2/example4autoplot.svg',
'all-w2/example4lmmautoplot.svg', 'all-w2/example5lmmautoplot1.svg',
'all-w2/example5lmmautoplot2.svg', 'all-w2/example6lmmautoplot2.svg',
'all-w2/example7lmmautoplot.svg', 'all-w2/exercise10autoplot.svg',
'all-w2/exercise11autoplot1.svg', 'all-w2/exercise11autoplot2.svg',
'all-w2/exercise12autoplot.svg', 'all-w2/exercise13autoplot1.svg',
'all-w2/exercise13autoplot2.svg', 'all-w2/exercise14autoplot.svg',
'all-w2/exercise15autoplot1.svg', …,
'variogram/variogram-palette-colourblind.svg', and
'variogram/variogram-produced.svg'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.4.0
Check: package dependencies
Result: NOTE
Package which this enhances but not available for checking: ‘asreml’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.3.3
Check: package dependencies
Result: NOTE
Package which this enhances but not available for checking: 'asreml'
Flavor: r-oldrel-windows-x86_64