Last updated on 2026-02-03 19:51:18 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 6.36 | 82.83 | 89.19 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 4.40 | 58.29 | 62.69 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 12.00 | 105.05 | 117.05 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 11.00 | 113.22 | 124.22 | ERROR | |
| r-devel-windows-x86_64 | 0.1.0 | 9.00 | 88.00 | 97.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 5.89 | 74.67 | 80.56 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 6.36 | 73.30 | 79.66 | OK | |
| r-release-macos-arm64 | 0.1.0 | OK | ||||
| r-release-macos-x86_64 | 0.1.0 | 3.00 | 88.00 | 91.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 9.00 | 85.00 | 94.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 3.00 | 92.00 | 95.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 11.00 | 108.00 | 119.00 | OK |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘brisk-Ex.R’ failed
The error most likely occurred in:
> ### Name: benefit
> ### Title: Bayesian Benefit Risk
> ### Aliases: benefit risk br mcda
>
> ### ** Examples
>
> set.seed(1132)
> ilogit <- function(x) 1 / (1 + exp(-x))
> out <- mcda(
+ benefit("CV", function(x) ilogit(x), weight = .75),
+ risk("DVT", function(x) ilogit(- .5 * x), weight = .25),
+ br_group(
+ label = "PBO",
+ CV = rnorm(1e4, .1),
+ DVT = rnorm(1e4, .1)
+ ),
+ br_group(
+ label = "TRT",
+ CV = rnorm(1e4, 2),
+ DVT = rnorm(1e4, 1)
+ )
+ )
>
> out
# A tibble: 20,000 × 11
CV CV_weight CV_utility CV_score DVT DVT_weight DVT_utility DVT_score
<dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 1.47 0.75 0.813 0.610 0.439 0.25 0.445 0.111
2 0.239 0.75 0.559 0.420 -2.12 0.25 0.743 0.186
3 0.969 0.75 0.725 0.544 0.974 0.25 0.381 0.0951
4 0.655 0.75 0.658 0.494 0.0771 0.25 0.490 0.123
5 1.51 0.75 0.819 0.615 -0.993 0.25 0.622 0.155
6 -1.32 0.75 0.210 0.158 -0.874 0.25 0.607 0.152
7 0.395 0.75 0.598 0.448 1.03 0.25 0.375 0.0936
8 -1.43 0.75 0.193 0.145 -0.903 0.25 0.611 0.153
9 0.180 0.75 0.545 0.409 -0.685 0.25 0.585 0.146
10 -0.960 0.75 0.277 0.208 -1.50 0.25 0.679 0.170
# ℹ 19,990 more rows
# ℹ 3 more variables: label <chr>, iter <int>, total <dbl>
>
> summary(out, probs = c(.025, .5, .975))
Error in `dplyr::summarize()`:
ℹ In argument: `qtiles = safe_quantile(.data$total, prob = c(0.025, 0.5,
0.975))`.
ℹ In group 1: `label = "PBO"`.
Caused by error:
! `qtiles` must be size 1, not 3.
ℹ To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─base::summary(out, probs = c(0.025, 0.5, 0.975))
2. ├─brisk:::summary.brisk_br(out, probs = c(0.025, 0.5, 0.975))
3. │ └─scores %>% dplyr::group_by(.data$label) %>% ...
4. ├─dplyr::summarize(...)
5. ├─dplyr:::summarise.grouped_df(...)
6. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
7. │ └─base::withCallingHandlers(...)
8. ├─dplyr:::dplyr_internal_error(...)
9. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
10. │ └─rlang:::signal_abort(cnd, .file)
11. │ └─base::signalCondition(cnd)
12. └─dplyr (local) `<fn>`(`<dpl:::__>`)
13. └─dplyr (local) handler(cnd)
14. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(brisk)
>
> test_check("brisk")
Saving _problems/test-plot-26.R
Saving _problems/test-plot-34.R
Saving _problems/test-summary-25.R
[ FAIL 3 | WARN 10 | SKIP 4 | PASS 32 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-plot.R:44:3', 'test-plot.R:52:3', 'test-plot.R:60:3',
'test-plot.R:68:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plot.R:26:3'): plot ────────────────────────────────────────────
Error in `dplyr::summarize(., mean = mean(.data$total), qtiles = safe_quantile(.data$total, prob = !!probs))`: i In argument: `qtiles = safe_quantile(.data$total, prob = c(0.025, 0.975))`.
i In group 1: `label = "PBO"`.
Caused by error:
! `qtiles` must be size 1, not 2.
i To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─base::plot(out) at test-plot.R:26:3
2. ├─brisk:::plot.brisk_br(out)
3. │ ├─base::summary(x, reference = reference)
4. │ └─brisk:::summary.brisk_br(x, reference = reference)
5. │ └─scores %>% dplyr::group_by(.data$label) %>% ...
6. ├─dplyr::summarize(...)
7. ├─dplyr:::summarise.grouped_df(...)
8. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
9. │ └─base::withCallingHandlers(...)
10. ├─dplyr:::dplyr_internal_error(...)
11. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
12. │ └─rlang:::signal_abort(cnd, .file)
13. │ └─base::signalCondition(cnd)
14. └─dplyr (local) `<fn>`(`<dpl:::__>`)
15. └─dplyr (local) handler(cnd)
16. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-plot.R:34:3'): plot with ref ───────────────────────────────────
Error in `dplyr::summarize(., mean = mean(.data$total), qtiles = safe_quantile(.data$total, prob = !!probs))`: i In argument: `qtiles = safe_quantile(.data$total, prob = c(0.025, 0.975))`.
i In group 1: `label = "TRT"`.
Caused by error:
! `qtiles` must be size 1, not 2.
i To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─base::plot(out, reference = "PBO") at test-plot.R:34:3
2. ├─brisk:::plot.brisk_br(out, reference = "PBO")
3. │ ├─base::summary(x, reference = reference)
4. │ └─brisk:::summary.brisk_br(x, reference = reference)
5. │ └─scores %>% dplyr::group_by(.data$label) %>% ...
6. ├─dplyr::summarize(...)
7. ├─dplyr:::summarise.grouped_df(...)
8. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
9. │ └─base::withCallingHandlers(...)
10. ├─dplyr:::dplyr_internal_error(...)
11. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
12. │ └─rlang:::signal_abort(cnd, .file)
13. │ └─base::signalCondition(cnd)
14. └─dplyr (local) `<fn>`(`<dpl:::__>`)
15. └─dplyr (local) handler(cnd)
16. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-summary.R:25:3'): summary() ────────────────────────────────────
Error in `dplyr::summarize(., mean = mean(.data$total), qtiles = safe_quantile(.data$total, prob = !!probs))`: i In argument: `qtiles = safe_quantile(.data$total, prob = c(0.025, 0.975))`.
i In group 1: `label = "PBO"`.
Caused by error:
! `qtiles` must be size 1, not 2.
i To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-summary.R:25:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::summary(res)
5. ├─brisk:::summary.brisk_br(res)
6. │ └─scores %>% dplyr::group_by(.data$label) %>% ...
7. ├─dplyr::summarize(...)
8. ├─dplyr:::summarise.grouped_df(...)
9. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
10. │ └─base::withCallingHandlers(...)
11. ├─dplyr:::dplyr_internal_error(...)
12. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
13. │ └─rlang:::signal_abort(cnd, .file)
14. │ └─base::signalCondition(cnd)
15. └─dplyr (local) `<fn>`(`<dpl:::__>`)
16. └─dplyr (local) handler(cnd)
17. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
[ FAIL 3 | WARN 10 | SKIP 4 | PASS 32 ]
Deleting unused snapshots: 'plot/plot-ref.png', 'plot/plot-utility-ref.png',
'plot/plot-utility-stacked-ref.png', 'plot/plot-utility-stacked.png',
'plot/plot-utility.png', and 'plot/plot.png'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(brisk)
>
> test_check("brisk")
Saving _problems/test-plot-26.R
Saving _problems/test-plot-34.R
Saving _problems/test-summary-25.R
[ FAIL 3 | WARN 10 | SKIP 4 | PASS 32 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-plot.R:44:3', 'test-plot.R:52:3', 'test-plot.R:60:3',
'test-plot.R:68:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plot.R:26:3'): plot ────────────────────────────────────────────
Error in `dplyr::summarize(., mean = mean(.data$total), qtiles = safe_quantile(.data$total, prob = !!probs))`: i In argument: `qtiles = safe_quantile(.data$total, prob = c(0.025, 0.975))`.
i In group 1: `label = "PBO"`.
Caused by error:
! `qtiles` must be size 1, not 2.
i To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─base::plot(out) at test-plot.R:26:3
2. ├─brisk:::plot.brisk_br(out)
3. │ ├─base::summary(x, reference = reference)
4. │ └─brisk:::summary.brisk_br(x, reference = reference)
5. │ └─scores %>% dplyr::group_by(.data$label) %>% ...
6. ├─dplyr::summarize(...)
7. ├─dplyr:::summarise.grouped_df(...)
8. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
9. │ └─base::withCallingHandlers(...)
10. ├─dplyr:::dplyr_internal_error(...)
11. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
12. │ └─rlang:::signal_abort(cnd, .file)
13. │ └─base::signalCondition(cnd)
14. └─dplyr (local) `<fn>`(`<dpl:::__>`)
15. └─dplyr (local) handler(cnd)
16. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-plot.R:34:3'): plot with ref ───────────────────────────────────
Error in `dplyr::summarize(., mean = mean(.data$total), qtiles = safe_quantile(.data$total, prob = !!probs))`: i In argument: `qtiles = safe_quantile(.data$total, prob = c(0.025, 0.975))`.
i In group 1: `label = "TRT"`.
Caused by error:
! `qtiles` must be size 1, not 2.
i To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─base::plot(out, reference = "PBO") at test-plot.R:34:3
2. ├─brisk:::plot.brisk_br(out, reference = "PBO")
3. │ ├─base::summary(x, reference = reference)
4. │ └─brisk:::summary.brisk_br(x, reference = reference)
5. │ └─scores %>% dplyr::group_by(.data$label) %>% ...
6. ├─dplyr::summarize(...)
7. ├─dplyr:::summarise.grouped_df(...)
8. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
9. │ └─base::withCallingHandlers(...)
10. ├─dplyr:::dplyr_internal_error(...)
11. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
12. │ └─rlang:::signal_abort(cnd, .file)
13. │ └─base::signalCondition(cnd)
14. └─dplyr (local) `<fn>`(`<dpl:::__>`)
15. └─dplyr (local) handler(cnd)
16. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-summary.R:25:3'): summary() ────────────────────────────────────
Error in `dplyr::summarize(., mean = mean(.data$total), qtiles = safe_quantile(.data$total, prob = !!probs))`: i In argument: `qtiles = safe_quantile(.data$total, prob = c(0.025, 0.975))`.
i In group 1: `label = "PBO"`.
Caused by error:
! `qtiles` must be size 1, not 2.
i To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-summary.R:25:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::summary(res)
5. ├─brisk:::summary.brisk_br(res)
6. │ └─scores %>% dplyr::group_by(.data$label) %>% ...
7. ├─dplyr::summarize(...)
8. ├─dplyr:::summarise.grouped_df(...)
9. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
10. │ └─base::withCallingHandlers(...)
11. ├─dplyr:::dplyr_internal_error(...)
12. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
13. │ └─rlang:::signal_abort(cnd, .file)
14. │ └─base::signalCondition(cnd)
15. └─dplyr (local) `<fn>`(`<dpl:::__>`)
16. └─dplyr (local) handler(cnd)
17. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
[ FAIL 3 | WARN 10 | SKIP 4 | PASS 32 ]
Deleting unused snapshots: 'plot/plot-ref.png', 'plot/plot-utility-ref.png',
'plot/plot-utility-stacked-ref.png', 'plot/plot-utility-stacked.png',
'plot/plot-utility.png', and 'plot/plot.png'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc