Last updated on 2026-10-17 12:50:49 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.9.0 | 7.11 | 178.49 | 185.60 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.9.0 | 5.10 | 118.34 | 123.44 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.9.0 | 115.94 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.9.0 | 117.17 | OK | |||
| r-devel-windows-x86_64 | 1.9.0 | 9.00 | 158.00 | 167.00 | OK | |
| r-patched-linux-x86_64 | 1.9.0 | 7.47 | 166.49 | 173.96 | OK | |
| r-release-linux-x86_64 | 1.9.0 | 7.57 | 165.23 | 172.80 | OK | |
| r-release-macos-arm64 | 1.9.0 | 2.00 | 40.00 | 42.00 | OK | |
| r-release-macos-x86_64 | 1.9.0 | 5.00 | 250.00 | 255.00 | OK | |
| r-release-windows-x86_64 | 1.9.0 | 9.00 | 131.00 | 140.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.9.0 | 3.00 | 55.00 | 58.00 | OK | |
| r-oldrel-macos-x86_64 | 1.9.0 | 5.00 | 245.00 | 250.00 | OK | |
| r-oldrel-windows-x86_64 | 1.9.0 | 11.00 | 184.00 | 195.00 | OK |
Version: 1.9.0
Check: tests
Result: ERROR
Running 'testthat.R' [27s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(withr)
> library(freesurfer)
>
> test_check("freesurfer")
Starting 2 test processes.
> test-mri_convert.R: v Converting from NIfTI to FreeSurfer format
> test-mri_convert.R: i nii.gz -> mgz
> test-mri_convert.R: v Converting from NIfTI to FreeSurfer format
> test-mri_convert.R: i nii.gz -> mgz
> test-mris_euler_number.R: v Calculating Euler number for surface
> test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c679e342a.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c75ba549d.txt
> test-mris_euler_number.R: v Euler number calculation completed
> test-mris_euler_number.R: i Results: euler = 2
> test-mris_euler_number.R: v Calculating Euler number for surface
> test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c17977b11.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c358ec86.txt
> test-mris_euler_number.R: v Euler number calculation completed
> test-mris_euler_number.R: i Results: euler = 2
> test-mris_euler_number.R: v Calculating Euler number for surface
> test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c24da426b.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c6b1b3e14.txt
> test-mris_euler_number.R: v Euler number calculation completed
> test-mris_euler_number.R: i Results: euler = 2
> test-mris_euler_number.R: v Calculating Euler number for surface
> test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226ceb57bf0.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c4e08894.txt
> test-mris_euler_number.R: v Euler number calculation completed
> test-mris_euler_number.R: i Results: euler = 2
> test-mris_euler_number.R: v Calculating Euler number for surface
> test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c36427498.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c1f2748f6.txt
> test-mris_euler_number.R: v Calculating Euler number for surface
> test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c108e3053.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c551a10ae.txt
> test-mris_euler_number.R: v Euler number calculation completed
> test-mris_euler_number.R: i Results: euler number = 2
> test-mris_euler_number.R: v Calculating Euler number for surface
> test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c74892e50.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c66592052.txt
> test-recon_all.R: mock_fs/ recon-all -subjid file6226c219d587e -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c79467c08" -i D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c79467c08/test_subject\file6226c219d587e.nii -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c79467c08"
> test-reconner.R: mock/path recon-all -subjid subject01 -i D:\RCompile\CRANpkg\local\4.6\freesurfer.Rcheck\tests\testthat\input.nii -all
> test-reconner.R: mock/path recon-all -subjid subject01 -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c2388d44" -i D:\RCompile\CRANpkg\local\4.6\freesurfer.Rcheck\tests\testthat\input.nii -all
> test-reconner.R: mock/path recon-all -subjid input_file -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c757b7d35" -i D:\RCompile\CRANpkg\local\4.6\freesurfer.Rcheck\tests\testthat\input_file.nii -all
> test-tracker.R:
Error:
! testthat subprocess exited in file 'test-tracker.R'.
Caused by error:
! R session crashed with exit code -1073741819
Backtrace:
▆
1. └─testthat::test_check("freesurfer")
2. └─testthat::test_dir(...)
3. └─testthat:::test_files(...)
4. └─testthat:::test_files_parallel(...)
5. ├─withr::with_dir(...)
6. │ └─base::force(code)
7. ├─testthat::with_reporter(...)
8. │ └─base::tryCatch(...)
9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")
13. └─queue$poll(Inf)
14. └─base::lapply(...)
15. └─testthat (local) FUN(X[[i]], ...)
16. └─private$handle_error(msg, i)
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
Execution halted
Flavor: r-release-windows-x86_64